_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:1     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-27
 Query name: gi|1007719429|ref|XP_015801178.1| PREDICTED: methionine-R-sulfoxide reductase B1-A-like isoform X1 [Nothobranchius furzeri]
 Query range: 1-110  (total 110)

 Target: /data/www-rg/seblastian_results/356707354/tempfiles/temptarget.fasta
 Chromosome: OMLM01007873.1:subseq_0,75304_ Strand: +
 Positions:
 -Exon 1  24155        24209
 -Exon 2  24788        24930
 -Exon 3  25191        25305
 -Exon 4  25722        25738

 Redox box: no

Query   MSFCSFFGGEVFKDHFKPG <---Intron---> IYVCSKCDHQLFSSRSKYEHSSPWPAFTETIHEDSVSKYEERPGVYK <---Intron---> VL
        |||||| |||||||||  | <   578bp    > ||||||||/||||||||||||||||||||||||||||||/|||| || <   260bp    > ||
Target  MSFCSFSGGEVFKDHFNTG                IYVCSKCDYQLFSSRSKYEHSSPWPAFTETIHEDSVSKYKERPGAYK                VL
        attttttggggtagctaag                atgttatgtccttactatgcttctcgtagaacggagtatagacggta                gc
        tctgctcggattaaatac                gtatgcagaaattcggcaaaacccgcctcactaaagtcaaaagcgcaa                tt
        ggtttcctagctacctta                gttttcgttcggcccccgcgcaacgaccagcctgccgcacggataatg                gg
                                                                                                            

Query   CGKCGNGLGHEFVNDGPNRGLSRFUIFSSSLKFIPKD <---Intron---> KVDGQ
        ||||||||||||||||| /||||||||||||||/||| <   416bp    > |||||
Target  CGKCGNGLGHEFVNDGPAKGLSRFUIFSSSLKFVPKD                KVDGQ
        tgatgagcgcgtgaggcgagctcttataatcatgcag                agggc
        ggaggagtgaattaagccagtcgtgttggctattca                aataga
        taatacagctgtgctgacattttcaacccaggccta                tgttaa
                                *                                 
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 55 ; UGA-SECIS: 106

------- SECIS element -- id:1 -- grade:B ----
 Chromosome = OMLM01007873.1:subseq_0,75304_ Strand = + Positions = 25794 - 25870
 Found by:  Infernal (score=19.97) Covels (score=13.1)
 Stem2 length = 8   Apical loop length = 22   Insertion in stem2 = 0, 0
 Free Energy = -20.35

         ..(((((((.......(((((((((((((((..................)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccuggcccuAAAcC---cuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         ((({(([(((--((..{[[(({(((((((......................)))))))}))]]}..--.)))))]))})))
 target  GUGCGGACAG--UGAAUGAAGUGUUCUGGGACAAAGACCCAUCUGGGAGCACCAGGGCUCUGAUGA--AUGCUGGCCUCAC
                         ****            ^^                          ****                 
_________________________________.______________________._________________________________________________________________________________
_|*|_|*|_|*|_|*|_|*|_|*|_|*|_|*| |       knownSP        |  secis_index:2     SeB_exonerate category:ALI_U |*|_|*|_|*|_|*|_|*|_|*|_|*|_|*|_
_________________________________|______________________|_________________________________________________________________________________

 Blastx evalue: 2e-27
 Query name: gi|1007719429|ref|XP_015801178.1| PREDICTED: methionine-R-sulfoxide reductase B1-A-like isoform X1 [Nothobranchius furzeri]
 Query range: 1-110  (total 110)

 Target: /data/www-rg/seblastian_results/356707354/tempfiles/temptarget.fasta
 Chromosome: OMLM01007873.1:subseq_0,75304_ Strand: +
 Positions:
 -Exon 1  24155        24209
 -Exon 2  24788        24930
 -Exon 3  25191        25305
 -Exon 4  25722        25738

 Redox box: no

Query   MSFCSFFGGEVFKDHFKPG <---Intron---> IYVCSKCDHQLFSSRSKYEHSSPWPAFTETIHEDSVSKYEERPGVYK <---Intron---> VL
        |||||| |||||||||  | <   578bp    > ||||||||/||||||||||||||||||||||||||||||/|||| || <   260bp    > ||
Target  MSFCSFSGGEVFKDHFNTG                IYVCSKCDYQLFSSRSKYEHSSPWPAFTETIHEDSVSKYKERPGAYK                VL
        attttttggggtagctaag                atgttatgtccttactatgcttctcgtagaacggagtatagacggta                gc
        tctgctcggattaaatac                gtatgcagaaattcggcaaaacccgcctcactaaagtcaaaagcgcaa                tt
        ggtttcctagctacctta                gttttcgttcggcccccgcgcaacgaccagcctgccgcacggataatg                gg
                                                                                                            

Query   CGKCGNGLGHEFVNDGPNRGLSRFUIFSSSLKFIPKD <---Intron---> KVDGQ
        ||||||||||||||||| /||||||||||||||/||| <   416bp    > |||||
Target  CGKCGNGLGHEFVNDGPAKGLSRFUIFSSSLKFVPKD                KVDGQ
        tgatgagcgcgtgaggcgagctcttataatcatgcag                agggc
        ggaggagtgaattaagccagtcgtgttggctattca                aataga
        taatacagctgtgctgacattttcaacccaggccta                tgttaa
                                *                                 
 Sequence until next stop: 
TAA
 * 

 Distance CDS-SECIS: 1290 ; UGA-SECIS: 1341

------- SECIS element -- id:2 -- grade:B ----
 Chromosome = OMLM01007873.1:subseq_0,75304_ Strand = + Positions = 27029 - 27102
 Found by:  Infernal (score=18.08) Covels (score=14.98)
 Stem2 length = 10   Apical loop length = 16   Insertion in stem2 = 1, 0
 Free Energy = -19.49

         ..(((((((.......((((((((((.(((((...............)))))))))))))))........)))))))..
 model   uucggucaugcgUuaAUGAcGgccug-gcccuAAAcCcuuuuuggggcgggccaggcCuGAUGuuuuuucaugaccggc
         .(({({(((.--....{[[(((((((.((((......-..........)))))))))))]]}..--....)))})})).
 target  CUGAGCGCAG--CAGAUGACGUGCUGUGGGAUAAAGC-CCAGUGGAUCUCCCCGGCACGGAUAG--AAAAUGCCCACAC
                         ****            ^^^                       ****